%FILES%
usr/
usr/bin/
usr/bin/addCols
usr/bin/all_bz
usr/bin/all_lz
usr/bin/ameme
usr/bin/autoDtd
usr/bin/autoMZ
usr/bin/autoSql
usr/bin/autoXml
usr/bin/ave
usr/bin/aveCols
usr/bin/axtChain
usr/bin/axtSort
usr/bin/axtSwap
usr/bin/axtToMaf
usr/bin/axtToPsl
usr/bin/bamToPsl
usr/bin/barChartMaxLimit
usr/bin/bedClip
usr/bin/bedCommonRegions
usr/bin/bedCoverage
usr/bin/bedExtendRanges
usr/bin/bedGeneParts
usr/bin/bedGraphPack
usr/bin/bedGraphToBigWig
usr/bin/bedIntersect
usr/bin/bedItemOverlapCount
usr/bin/bedJoinTabOffset
usr/bin/bedJoinTabOffset.py
usr/bin/bedMergeAdjacent
usr/bin/bedPartition
usr/bin/bedPileUps
usr/bin/bedRemoveOverlap
usr/bin/bedRestrictToPositions
usr/bin/bedSort
usr/bin/bedToBigBed
usr/bin/bedToExons
usr/bin/bedToGenePred
usr/bin/bedToPsl
usr/bin/bedWeedOverlapping
usr/bin/bigBedInfo
usr/bin/bigBedNamedItems
usr/bin/bigBedSummary
usr/bin/bigBedToBed
usr/bin/bigChainBreaks
usr/bin/bigChainToChain
usr/bin/bigGenePredToGenePred
usr/bin/bigGuessDb
usr/bin/bigHeat
usr/bin/bigMafToMaf
usr/bin/bigPslToPsl
usr/bin/bigWigAverageOverBed
usr/bin/bigWigCat
usr/bin/bigWigCluster
usr/bin/bigWigCorrelate
usr/bin/bigWigInfo
usr/bin/bigWigMerge
usr/bin/bigWigSummary
usr/bin/bigWigToBedGraph
usr/bin/bigWigToWig
usr/bin/binFromRange
usr/bin/blastToPsl
usr/bin/blastXmlToPsl
usr/bin/blastzWrapper
usr/bin/blat
usr/bin/blatHuge
usr/bin/calc
usr/bin/catDir
usr/bin/catUncomment
usr/bin/chainAntiRepeat
usr/bin/chainBridge
usr/bin/chainCleaner
usr/bin/chainFilter
usr/bin/chainMergeSort
usr/bin/chainNet
usr/bin/chainPreNet
usr/bin/chainScore
usr/bin/chainSort
usr/bin/chainSplit
usr/bin/chainStitchId
usr/bin/chainSwap
usr/bin/chainToAxt
usr/bin/chainToBigChain
usr/bin/chainToPsl
usr/bin/chainToPslBasic
usr/bin/checkAgpAndFa
usr/bin/checkCoverageGaps
usr/bin/checkHgFindSpec
usr/bin/checkTableCoords
usr/bin/chopFaLines
usr/bin/chromGraphFromBin
usr/bin/chromGraphToBin
usr/bin/chromToUcsc
usr/bin/clusterGenes
usr/bin/clusterMatrixToBarChartBed
usr/bin/colTransform
usr/bin/countChars
usr/bin/cpg_lh
usr/bin/crTreeIndexBed
usr/bin/crTreeSearchBed
usr/bin/dbDbToHubTxt
usr/bin/dbSnoop
usr/bin/dbTrash
usr/bin/endsInLf
usr/bin/estOrient
usr/bin/expMatrixToBarchartBed
usr/bin/faAlign
usr/bin/faCmp
usr/bin/faCount
usr/bin/faFilter
usr/bin/faFilterN
usr/bin/faFrag
usr/bin/faNoise
usr/bin/faOneRecord
usr/bin/faPolyASizes
usr/bin/faRandomize
usr/bin/faRc
usr/bin/faSize
usr/bin/faSomeRecords
usr/bin/faSplit
usr/bin/faToFastq
usr/bin/faToTab
usr/bin/faToTwoBit
usr/bin/faToVcf
usr/bin/faTrans
usr/bin/fastqStatsAndSubsample
usr/bin/fastqToFa
usr/bin/featureBits
usr/bin/fetchChromSizes
usr/bin/findMotif
usr/bin/fixStepToBedGraph.pl
usr/bin/fixTrackDb
usr/bin/gapToLift
usr/bin/gencodeVersionForGenes
usr/bin/genePredCheck
usr/bin/genePredFilter
usr/bin/genePredHisto
usr/bin/genePredSingleCover
usr/bin/genePredToBed
usr/bin/genePredToBigGenePred
usr/bin/genePredToFakePsl
usr/bin/genePredToGtf
usr/bin/genePredToMafFrames
usr/bin/genePredToProt
usr/bin/gensub2
usr/bin/getRna
usr/bin/getRnaPred
usr/bin/get_covered
usr/bin/get_standard_headers
usr/bin/gfClient
usr/bin/gfPcr
usr/bin/gfServer
usr/bin/gfServerHuge
usr/bin/gff3ToGenePred
usr/bin/gff3ToPsl
usr/bin/gmtime
usr/bin/gtfToGenePred
usr/bin/headRest
usr/bin/hgBbiDbLink
usr/bin/hgFakeAgp
usr/bin/hgFindSpec
usr/bin/hgGcPercent
usr/bin/hgGoldGapGl
usr/bin/hgLoadBed
usr/bin/hgLoadChain
usr/bin/hgLoadGap
usr/bin/hgLoadMaf
usr/bin/hgLoadMafSummary
usr/bin/hgLoadNet
usr/bin/hgLoadOut
usr/bin/hgLoadOutJoined
usr/bin/hgLoadSqlTab
usr/bin/hgLoadWiggle
usr/bin/hgSpeciesRna
usr/bin/hgTrackDb
usr/bin/hgWiggle
usr/bin/hgsql
usr/bin/hgsqldump
usr/bin/hgvsToVcf
usr/bin/hicInfo
usr/bin/htmlCheck
usr/bin/hubCheck
usr/bin/hubClone
usr/bin/hubPublicCheck
usr/bin/isPcr
usr/bin/ixIxx
usr/bin/lastz-1.04.00
usr/bin/lastzWrapper
usr/bin/lastz_D-1.04.00
usr/bin/lav2maf
usr/bin/lavToAxt
usr/bin/lavToPsl
usr/bin/ldHgGene
usr/bin/liftOver
usr/bin/liftOverMerge
usr/bin/liftUp
usr/bin/linesToRa
usr/bin/localtime
usr/bin/maf2fasta
usr/bin/maf2lav
usr/bin/mafAddIRows
usr/bin/mafAddQRows
usr/bin/mafCoverage
usr/bin/mafFetch
usr/bin/mafFilter
usr/bin/mafFind
usr/bin/mafFrag
usr/bin/mafFrags
usr/bin/mafGene
usr/bin/mafMeFirst
usr/bin/mafNoAlign
usr/bin/mafOrder
usr/bin/mafRanges
usr/bin/mafSpeciesList
usr/bin/mafSpeciesSubset
usr/bin/mafSplit
usr/bin/mafSplitPos
usr/bin/mafToAxt
usr/bin/mafToBigMaf
usr/bin/mafToPsl
usr/bin/mafToSnpBed
usr/bin/maf_checkThread
usr/bin/maf_order
usr/bin/maf_project
usr/bin/maf_sort
usr/bin/mafsInRegion
usr/bin/makeTableList
usr/bin/maskOutFa
usr/bin/matrixClusterColumns
usr/bin/matrixMarketToTsv
usr/bin/matrixNormalize
usr/bin/matrixToBarChartBed
usr/bin/mktime
usr/bin/mrnaToGene
usr/bin/multiz
usr/bin/netChainSubset
usr/bin/netClass
usr/bin/netFilter
usr/bin/netSplit
usr/bin/netSyntenic
usr/bin/netToAxt
usr/bin/netToBed
usr/bin/newProg
usr/bin/newPythonProg
usr/bin/nibFrag
usr/bin/nibSize
usr/bin/oligoMatch
usr/bin/overlapSelect
usr/bin/pair2tb
usr/bin/para
usr/bin/paraFetch
usr/bin/paraHub
usr/bin/paraHubStop
usr/bin/paraNode
usr/bin/paraNodeStart
usr/bin/paraNodeStatus
usr/bin/paraNodeStop
usr/bin/paraSync
usr/bin/paraTestJob
usr/bin/parasol
usr/bin/positionalTblCheck
usr/bin/pslCDnaFilter
usr/bin/pslCat
usr/bin/pslCheck
usr/bin/pslDropOverlap
usr/bin/pslFilter
usr/bin/pslHisto
usr/bin/pslLiftSubrangeBlat
usr/bin/pslMap
usr/bin/pslMapPostChain
usr/bin/pslMrnaCover
usr/bin/pslPairs
usr/bin/pslPartition
usr/bin/pslPosTarget
usr/bin/pslPretty
usr/bin/pslProtToRnaCoords
usr/bin/pslRc
usr/bin/pslRecalcMatch
usr/bin/pslRemoveFrameShifts
usr/bin/pslReps
usr/bin/pslScore
usr/bin/pslSelect
usr/bin/pslSomeRecords
usr/bin/pslSort
usr/bin/pslSortAcc
usr/bin/pslSpliceJunctions
usr/bin/pslSplitOnTarget
usr/bin/pslStats
usr/bin/pslSwap
usr/bin/pslToBed
usr/bin/pslToBigPsl
usr/bin/pslToChain
usr/bin/pslToPslx
usr/bin/pslxToFa
usr/bin/qaToQac
usr/bin/qacAgpLift
usr/bin/qacToQa
usr/bin/qacToWig
usr/bin/raSqlQuery
usr/bin/raToLines
usr/bin/raToTab
usr/bin/randomLines
usr/bin/rmFaDups
usr/bin/rmskAlignToPsl
usr/bin/roast
usr/bin/rowsToCols
usr/bin/single_cov2
usr/bin/sizeof
usr/bin/spacedToTab
usr/bin/splitFile
usr/bin/splitFileByColumn
usr/bin/sqlToXml
usr/bin/strexCalc
usr/bin/stringify
usr/bin/subChar
usr/bin/subColumn
usr/bin/tabFmt
usr/bin/tabQuery
usr/bin/tabToTabDir
usr/bin/tailLines
usr/bin/tba
usr/bin/tdbQuery
usr/bin/tdbRename
usr/bin/tdbSort
usr/bin/textHistogram
usr/bin/tickToDate
usr/bin/toLower
usr/bin/toUpper
usr/bin/trackDbIndexBb
usr/bin/transMapPslToGenePred
usr/bin/trfBig
usr/bin/twoBitDup
usr/bin/twoBitInfo
usr/bin/twoBitMask
usr/bin/twoBitToFa
usr/bin/ucscApiClient
usr/bin/udr
usr/bin/vai.pl
usr/bin/validateFiles
usr/bin/validateManifest
usr/bin/varStepToBedGraph.pl
usr/bin/vcfToBed
usr/bin/webSync
usr/bin/wigCorrelate
usr/bin/wigEncode
usr/bin/wigToBigWig
usr/bin/wordLine
usr/bin/xmlCat
usr/bin/xmlToSql
usr/share/
usr/share/licenses/
usr/share/licenses/ucsc-genome-browser/
usr/share/licenses/ucsc-genome-browser/LICENSE
