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usr/
usr/bin/
usr/bin/coronaspades.py
usr/bin/metaplasmidspades.py
usr/bin/metaspades.py
usr/bin/metaviralspades.py
usr/bin/plasmidspades.py
usr/bin/rnaspades.py
usr/bin/rnaviralspades.py
usr/bin/spades
usr/bin/spades-bwa
usr/bin/spades-convert-bin-to-fasta
usr/bin/spades-core
usr/bin/spades-corrector-core
usr/bin/spades-gbuilder
usr/bin/spades-gfa-split
usr/bin/spades-gmapper
usr/bin/spades-gsimplifier
usr/bin/spades-hammer
usr/bin/spades-ionhammer
usr/bin/spades-kmer-estimating
usr/bin/spades-kmercount
usr/bin/spades-read-filter
usr/bin/spades.py
usr/bin/spades_init.py
usr/include/
usr/include/lexy/
usr/include/lexy/_detail/
usr/include/lexy/_detail/any_ref.hpp
usr/include/lexy/_detail/assert.hpp
usr/include/lexy/_detail/buffer_builder.hpp
usr/include/lexy/_detail/code_point.hpp
usr/include/lexy/_detail/config.hpp
usr/include/lexy/_detail/detect.hpp
usr/include/lexy/_detail/integer_sequence.hpp
usr/include/lexy/_detail/invoke.hpp
usr/include/lexy/_detail/iterator.hpp
usr/include/lexy/_detail/lazy_init.hpp
usr/include/lexy/_detail/memory_resource.hpp
usr/include/lexy/_detail/nttp_string.hpp
usr/include/lexy/_detail/stateless_lambda.hpp
usr/include/lexy/_detail/std.hpp
usr/include/lexy/_detail/string_view.hpp
usr/include/lexy/_detail/swar.hpp
usr/include/lexy/_detail/tuple.hpp
usr/include/lexy/_detail/type_name.hpp
usr/include/lexy/_detail/unicode_database.hpp
usr/include/lexy/action/
usr/include/lexy/action/base.hpp
usr/include/lexy/action/match.hpp
usr/include/lexy/action/parse.hpp
usr/include/lexy/action/parse_as_tree.hpp
usr/include/lexy/action/scan.hpp
usr/include/lexy/action/trace.hpp
usr/include/lexy/action/validate.hpp
usr/include/lexy/callback.hpp
usr/include/lexy/callback/
usr/include/lexy/callback/adapter.hpp
usr/include/lexy/callback/aggregate.hpp
usr/include/lexy/callback/base.hpp
usr/include/lexy/callback/bind.hpp
usr/include/lexy/callback/bit_cast.hpp
usr/include/lexy/callback/composition.hpp
usr/include/lexy/callback/constant.hpp
usr/include/lexy/callback/container.hpp
usr/include/lexy/callback/fold.hpp
usr/include/lexy/callback/forward.hpp
usr/include/lexy/callback/integer.hpp
usr/include/lexy/callback/noop.hpp
usr/include/lexy/callback/object.hpp
usr/include/lexy/callback/string.hpp
usr/include/lexy/code_point.hpp
usr/include/lexy/dsl.hpp
usr/include/lexy/dsl/
usr/include/lexy/dsl/any.hpp
usr/include/lexy/dsl/ascii.hpp
usr/include/lexy/dsl/base.hpp
usr/include/lexy/dsl/bits.hpp
usr/include/lexy/dsl/bom.hpp
usr/include/lexy/dsl/brackets.hpp
usr/include/lexy/dsl/branch.hpp
usr/include/lexy/dsl/byte.hpp
usr/include/lexy/dsl/capture.hpp
usr/include/lexy/dsl/case_folding.hpp
usr/include/lexy/dsl/char_class.hpp
usr/include/lexy/dsl/choice.hpp
usr/include/lexy/dsl/code_point.hpp
usr/include/lexy/dsl/combination.hpp
usr/include/lexy/dsl/context_counter.hpp
usr/include/lexy/dsl/context_flag.hpp
usr/include/lexy/dsl/context_identifier.hpp
usr/include/lexy/dsl/delimited.hpp
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usr/include/lexy/dsl/effect.hpp
usr/include/lexy/dsl/eof.hpp
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usr/include/lexy/dsl/expression.hpp
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usr/include/lexy/dsl/follow.hpp
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usr/include/lexy/dsl/member.hpp
usr/include/lexy/dsl/newline.hpp
usr/include/lexy/dsl/operator.hpp
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usr/include/lexy/dsl/parse_as.hpp
usr/include/lexy/dsl/parse_tree_node.hpp
usr/include/lexy/dsl/peek.hpp
usr/include/lexy/dsl/position.hpp
usr/include/lexy/dsl/production.hpp
usr/include/lexy/dsl/punctuator.hpp
usr/include/lexy/dsl/recover.hpp
usr/include/lexy/dsl/repeat.hpp
usr/include/lexy/dsl/return.hpp
usr/include/lexy/dsl/scan.hpp
usr/include/lexy/dsl/separator.hpp
usr/include/lexy/dsl/sequence.hpp
usr/include/lexy/dsl/sign.hpp
usr/include/lexy/dsl/subgrammar.hpp
usr/include/lexy/dsl/symbol.hpp
usr/include/lexy/dsl/terminator.hpp
usr/include/lexy/dsl/times.hpp
usr/include/lexy/dsl/token.hpp
usr/include/lexy/dsl/unicode.hpp
usr/include/lexy/dsl/until.hpp
usr/include/lexy/dsl/whitespace.hpp
usr/include/lexy/encoding.hpp
usr/include/lexy/error.hpp
usr/include/lexy/grammar.hpp
usr/include/lexy/input/
usr/include/lexy/input/argv_input.hpp
usr/include/lexy/input/base.hpp
usr/include/lexy/input/buffer.hpp
usr/include/lexy/input/file.hpp
usr/include/lexy/input/lexeme_input.hpp
usr/include/lexy/input/parse_tree_input.hpp
usr/include/lexy/input/range_input.hpp
usr/include/lexy/input/string_input.hpp
usr/include/lexy/input_location.hpp
usr/include/lexy/lexeme.hpp
usr/include/lexy/parse_tree.hpp
usr/include/lexy/token.hpp
usr/include/lexy/visualize.hpp
usr/include/lexy_ext/
usr/include/lexy_ext/compiler_explorer.hpp
usr/include/lexy_ext/parse_tree_algorithm.hpp
usr/include/lexy_ext/parse_tree_doctest.hpp
usr/include/lexy_ext/report_error.hpp
usr/include/lexy_ext/shell.hpp
usr/lib/
usr/lib/cmake/
usr/lib/cmake/lexy/
usr/lib/cmake/lexy/lexyConfig.cmake
usr/lib/cmake/lexy/lexyConfigVersion.cmake
usr/lib/cmake/lexy/lexyTargets-none.cmake
usr/lib/cmake/lexy/lexyTargets.cmake
usr/lib/liblexy_file.a
usr/share/
usr/share/spades/
usr/share/spades/GPLv2.txt
usr/share/spades/LICENSE
usr/share/spades/README.md
usr/share/spades/VERSION
usr/share/spades/biosynthetic_spades_hmms/
usr/share/spades/biosynthetic_spades_hmms/AMP.hmm.gz
usr/share/spades/biosynthetic_spades_hmms/AT.hmm.gz
usr/share/spades/biosynthetic_spades_hmms/CStart.hmm.gz
usr/share/spades/biosynthetic_spades_hmms/KR.hmm.gz
usr/share/spades/biosynthetic_spades_hmms/KS.hmm.gz
usr/share/spades/biosynthetic_spades_hmms/TE.hmm.gz
usr/share/spades/configs/
usr/share/spades/configs/corrector/
usr/share/spades/configs/corrector/corrector.info
usr/share/spades/configs/debruijn/
usr/share/spades/configs/debruijn/careful_mda_mode.info
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usr/share/spades/configs/debruijn/detail_info_printer.info
usr/share/spades/configs/debruijn/distance_estimation.info
usr/share/spades/configs/debruijn/hmm_mode.info
usr/share/spades/configs/debruijn/isolate_mode.info
usr/share/spades/configs/debruijn/large_genome_mode.info
usr/share/spades/configs/debruijn/mda_mode.info
usr/share/spades/configs/debruijn/meta_mode.info
usr/share/spades/configs/debruijn/metaplasmid_mode.info
usr/share/spades/configs/debruijn/metaviral_mode.info
usr/share/spades/configs/debruijn/pe_params.info
usr/share/spades/configs/debruijn/plasmid_mode.info
usr/share/spades/configs/debruijn/rna_mode.info
usr/share/spades/configs/debruijn/rnaviral_mode.info
usr/share/spades/configs/debruijn/sewage_mode.info
usr/share/spades/configs/debruijn/simplification.info
usr/share/spades/configs/debruijn/toy.info
usr/share/spades/configs/hammer/
usr/share/spades/configs/hammer/config.info
usr/share/spades/configs/ionhammer/
usr/share/spades/configs/ionhammer/ionhammer.cfg
usr/share/spades/coronaspades_hmms/
usr/share/spades/coronaspades_hmms/Pfam-A.SARS-CoV-2.hmm.gz
usr/share/spades/coronaspades_hmms/Phan-CoV.hmm.gz
usr/share/spades/pyyaml3/
usr/share/spades/pyyaml3/__init__.py
usr/share/spades/pyyaml3/composer.py
usr/share/spades/pyyaml3/constructor.py
usr/share/spades/pyyaml3/cyaml.py
usr/share/spades/pyyaml3/dumper.py
usr/share/spades/pyyaml3/emitter.py
usr/share/spades/pyyaml3/error.py
usr/share/spades/pyyaml3/events.py
usr/share/spades/pyyaml3/loader.py
usr/share/spades/pyyaml3/nodes.py
usr/share/spades/pyyaml3/parser.py
usr/share/spades/pyyaml3/reader.py
usr/share/spades/pyyaml3/representer.py
usr/share/spades/pyyaml3/resolver.py
usr/share/spades/pyyaml3/scanner.py
usr/share/spades/pyyaml3/serializer.py
usr/share/spades/pyyaml3/tokens.py
usr/share/spades/sewage/
usr/share/spades/sewage/usher_barcodes.csv
usr/share/spades/spades_pipeline/
usr/share/spades/spades_pipeline/commands_parser.py
usr/share/spades/spades_pipeline/common/
usr/share/spades/spades_pipeline/common/SeqIO.py
usr/share/spades/spades_pipeline/common/__init__.py
usr/share/spades/spades_pipeline/common/alignment.py
usr/share/spades/spades_pipeline/common/parallel_launcher.py
usr/share/spades/spades_pipeline/common/sam_parser.py
usr/share/spades/spades_pipeline/executors/
usr/share/spades/spades_pipeline/executors/executor_local.py
usr/share/spades/spades_pipeline/executors/executor_mpi.py
usr/share/spades/spades_pipeline/executors/executor_save_mpi_sh.py
usr/share/spades/spades_pipeline/executors/executor_save_yaml.py
usr/share/spades/spades_pipeline/executors/executor_slurm.py
usr/share/spades/spades_pipeline/executors/executors.py
usr/share/spades/spades_pipeline/options_parser.py
usr/share/spades/spades_pipeline/options_storage.py
usr/share/spades/spades_pipeline/process_cfg.py
usr/share/spades/spades_pipeline/scripts/
usr/share/spades/spades_pipeline/scripts/breaking_scaffolds_script.py
usr/share/spades/spades_pipeline/scripts/check_test_script.py
usr/share/spades/spades_pipeline/scripts/compress_all.py
usr/share/spades/spades_pipeline/scripts/copy_files.py
usr/share/spades/spades_pipeline/scripts/correction_iteration_script.py
usr/share/spades/spades_pipeline/scripts/plasmid_glue.py
usr/share/spades/spades_pipeline/scripts/preprocess_contigs.py
usr/share/spades/spades_pipeline/scripts/preprocess_interlaced_reads.py
usr/share/spades/spades_pipeline/stages/
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usr/share/spades/spades_pipeline/stages/before_start_stage.py
usr/share/spades/spades_pipeline/stages/breaking_scaffolds_stage.py
usr/share/spades/spades_pipeline/stages/check_test_stage.py
usr/share/spades/spades_pipeline/stages/correction_stage.py
usr/share/spades/spades_pipeline/stages/error_correction_stage.py
usr/share/spades/spades_pipeline/stages/pipeline.py
usr/share/spades/spades_pipeline/stages/preprocess_reads_stage.py
usr/share/spades/spades_pipeline/stages/scaffold_correction_stage.py
usr/share/spades/spades_pipeline/stages/spades_iteration_stage.py
usr/share/spades/spades_pipeline/stages/spades_stage.py
usr/share/spades/spades_pipeline/stages/stage.py
usr/share/spades/spades_pipeline/stages/terminating_stage.py
usr/share/spades/spades_pipeline/support.py
usr/share/spades/test_dataset/
usr/share/spades/test_dataset/ecoli_1K_1.fq.gz
usr/share/spades/test_dataset/ecoli_1K_2.fq.gz
usr/share/spades/test_dataset/genes_1K.gff
usr/share/spades/test_dataset/genes_1K.txt
usr/share/spades/test_dataset/operons_1K.gff
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usr/share/spades/test_dataset/reference_1K.fa.gz
usr/share/spades/test_dataset_plasmid/
usr/share/spades/test_dataset_plasmid/pl1.fq.gz
usr/share/spades/test_dataset_plasmid/pl2.fq.gz
