%FILES%
usr/
usr/lib/
usr/lib/R/
usr/lib/R/library/
usr/lib/R/library/trena/
usr/lib/R/library/trena/DESCRIPTION
usr/lib/R/library/trena/INDEX
usr/lib/R/library/trena/Meta/
usr/lib/R/library/trena/Meta/Rd.rds
usr/lib/R/library/trena/Meta/features.rds
usr/lib/R/library/trena/Meta/hsearch.rds
usr/lib/R/library/trena/Meta/links.rds
usr/lib/R/library/trena/Meta/nsInfo.rds
usr/lib/R/library/trena/Meta/package.rds
usr/lib/R/library/trena/Meta/vignette.rds
usr/lib/R/library/trena/NAMESPACE
usr/lib/R/library/trena/NEWS
usr/lib/R/library/trena/R/
usr/lib/R/library/trena/R/trena
usr/lib/R/library/trena/R/trena.rdb
usr/lib/R/library/trena/R/trena.rdx
usr/lib/R/library/trena/demos/
usr/lib/R/library/trena/demos/Assess_Distributions.ipynb
usr/lib/R/library/trena/demos/demoEnhancersDatabaseOnWhovian.R
usr/lib/R/library/trena/demos/findPiez02RegulatorySnps.R
usr/lib/R/library/trena/demos/findTFs.R
usr/lib/R/library/trena/demos/runLassoSolver.R
usr/lib/R/library/trena/demos/test.png
usr/lib/R/library/trena/demos/trem2/
usr/lib/R/library/trena/demos/trem2/go.R
usr/lib/R/library/trena/doc/
usr/lib/R/library/trena/doc/TReNA_Vignette.R
usr/lib/R/library/trena/doc/TReNA_Vignette.Rmd
usr/lib/R/library/trena/doc/TReNA_Vignette.html
usr/lib/R/library/trena/doc/caseStudyFour.Rmd
usr/lib/R/library/trena/doc/caseStudyFour.html
usr/lib/R/library/trena/doc/caseStudyOne.Rmd
usr/lib/R/library/trena/doc/caseStudyOne.html
usr/lib/R/library/trena/doc/caseStudyThree.Rmd
usr/lib/R/library/trena/doc/caseStudyThree.html
usr/lib/R/library/trena/doc/caseStudyTwo.Rmd
usr/lib/R/library/trena/doc/caseStudyTwo.html
usr/lib/R/library/trena/doc/index.html
usr/lib/R/library/trena/doc/overview.R
usr/lib/R/library/trena/doc/overview.Rmd
usr/lib/R/library/trena/doc/overview.html
usr/lib/R/library/trena/doc/simple.R
usr/lib/R/library/trena/doc/simple.Rmd
usr/lib/R/library/trena/doc/simple.html
usr/lib/R/library/trena/doc/tiny.R
usr/lib/R/library/trena/doc/tiny.Rmd
usr/lib/R/library/trena/doc/tiny.html
usr/lib/R/library/trena/extdata/
usr/lib/R/library/trena/extdata/all_motifs.meme
usr/lib/R/library/trena/extdata/ampAD.154genes.mef2cTFs.278samples.RData
usr/lib/R/library/trena/extdata/ampAD.58genes.mef2cTFs.278samples.RData
usr/lib/R/library/trena/extdata/brand.tbl.model.trimmed.RData
usr/lib/R/library/trena/extdata/human.regulatory.genes.RData
usr/lib/R/library/trena/extdata/mef2c.neigborhood.hg38.footprints.db
usr/lib/R/library/trena/extdata/mef2c.neighborhood.hg38.gtfAnnotation.db
usr/lib/R/library/trena/extdata/tbl.mef2c.model.RData
usr/lib/R/library/trena/extdata/vrk2.neigborhood.hg38.footprints.db
usr/lib/R/library/trena/extdata/vrk2.neighborhood.hg38.gtfAnnotation.db
usr/lib/R/library/trena/extdata/xgboost.sample.RData
usr/lib/R/library/trena/extdata/yeast-53genes-536-samples.RData
usr/lib/R/library/trena/help/
usr/lib/R/library/trena/help/AnIndex
usr/lib/R/library/trena/help/aliases.rds
usr/lib/R/library/trena/help/paths.rds
usr/lib/R/library/trena/help/trena.rdb
usr/lib/R/library/trena/help/trena.rdx
usr/lib/R/library/trena/html/
usr/lib/R/library/trena/html/00Index.html
usr/lib/R/library/trena/html/R.css
usr/lib/R/library/trena/misc/
usr/lib/R/library/trena/misc/assessSnp.R
usr/lib/R/library/trena/misc/createSQLiteDB.R
usr/lib/R/library/trena/misc/footprintFinding/
usr/lib/R/library/trena/misc/footprintFinding/piq/
usr/lib/R/library/trena/misc/footprintFinding/piq/makefile
usr/lib/R/library/trena/misc/makeTRN-proximalanddistal-demo.R
usr/lib/R/library/trena/misc/makeTRN-proximalonly-demo.R
usr/lib/R/library/trena/misc/monteCarloTRN.R
usr/lib/R/library/trena/misc/multiModels/
usr/lib/R/library/trena/misc/multiModels/aqp4-multi.R
usr/lib/R/library/trena/misc/multiModels/aqp4.R
usr/lib/R/library/trena/misc/multiModels/graphToJSON-devel.R
usr/lib/R/library/trena/misc/multiModels/style.js
usr/lib/R/library/trena/misc/profileDbQueries.R
usr/lib/R/library/trena/misc/runTReNA-demo.R
usr/lib/R/library/trena/notes/
usr/lib/R/library/trena/notes/fillEnhancerDatabase.txt
usr/lib/R/library/trena/unitTests/
usr/lib/R/library/trena/unitTests/bugDemo001.R
usr/lib/R/library/trena/unitTests/hidden_PCAMax.R
usr/lib/R/library/trena/unitTests/noTest_Trena.R-hidden
usr/lib/R/library/trena/unitTests/tbl.snps.RData
usr/lib/R/library/trena/unitTests/test_BayesSpikeSolver.R
usr/lib/R/library/trena/unitTests/test_BicorSolver.R
usr/lib/R/library/trena/unitTests/test_CandidateFilter.R
usr/lib/R/library/trena/unitTests/test_EnsembleSolver.R
usr/lib/R/library/trena/unitTests/test_FootprintFilter.R
usr/lib/R/library/trena/unitTests/test_FootprintFinder.R
usr/lib/R/library/trena/unitTests/test_GeneOntologyFilter.R
usr/lib/R/library/trena/unitTests/test_HumanDHSFilter.R
usr/lib/R/library/trena/unitTests/test_LassoPVSolver.R
usr/lib/R/library/trena/unitTests/test_LassoSolver.R
usr/lib/R/library/trena/unitTests/test_MotifMatcher.R
usr/lib/R/library/trena/unitTests/test_PearsonSolver.R
usr/lib/R/library/trena/unitTests/test_RandomForestSolver.R
usr/lib/R/library/trena/unitTests/test_RidgeSolver.R
usr/lib/R/library/trena/unitTests/test_Solver.R
usr/lib/R/library/trena/unitTests/test_SpearmanSolver.R
usr/lib/R/library/trena/unitTests/test_VarianceFilter.R
usr/lib/R/library/trena/unitTests/test_XGBoostSolver.R
usr/lib/R/library/trena/utils/
usr/lib/R/library/trena/utils/NaiveSolver.R
usr/lib/R/library/trena/utils/TReNA.R
usr/lib/R/library/trena/utils/additionalTReNATests.R
usr/lib/R/library/trena/utils/createGenomeScaleModel.R
usr/lib/R/library/trena/utils/createGlobusTable.R
usr/lib/R/library/trena/utils/currentDBs.html
usr/lib/R/library/trena/utils/determineSqrtLambda.R
usr/lib/R/library/trena/utils/evaluateAllSolvers.R
usr/lib/R/library/trena/utils/extraFunctions.R
usr/lib/R/library/trena/utils/runTReNA.R
usr/lib/R/library/trena/utils/test_NaiveSolver.R
usr/lib/R/library/trena/utils/test_TReNA.R
usr/lib/R/library/trena/utils/test_runTReNA.R
