%FILES%
usr/
usr/bin/
usr/bin/aggregate_scores_in_intervals.py
usr/bin/align_print_template.py
usr/bin/axt_extract_ranges.py
usr/bin/axt_to_fasta.py
usr/bin/axt_to_lav.py
usr/bin/axt_to_maf.py
usr/bin/bed_bigwig_profile.py
usr/bin/bed_build_windows.py
usr/bin/bed_complement.py
usr/bin/bed_count_by_interval.py
usr/bin/bed_count_overlapping.py
usr/bin/bed_coverage.py
usr/bin/bed_coverage_by_interval.py
usr/bin/bed_diff_basewise_summary.py
usr/bin/bed_extend_to.py
usr/bin/bed_intersect.py
usr/bin/bed_intersect_basewise.py
usr/bin/bed_merge_overlapping.py
usr/bin/bed_rand_intersect.py
usr/bin/bed_subtract_basewise.py
usr/bin/bnMapper.py
usr/bin/div_snp_table_chr.py
usr/bin/find_in_sorted_file.py
usr/bin/gene_fourfold_sites.py
usr/bin/get_scores_in_intervals.py
usr/bin/int_seqs_to_char_strings.py
usr/bin/interval_count_intersections.py
usr/bin/interval_join.py
usr/bin/lav_to_axt.py
usr/bin/lav_to_maf.py
usr/bin/line_select.py
usr/bin/lzop_build_offset_table.py
usr/bin/mMK_bitset.py
usr/bin/maf_build_index.py
usr/bin/maf_chop.py
usr/bin/maf_chunk.py
usr/bin/maf_col_counts.py
usr/bin/maf_col_counts_all.py
usr/bin/maf_count.py
usr/bin/maf_covered_ranges.py
usr/bin/maf_covered_regions.py
usr/bin/maf_div_sites.py
usr/bin/maf_drop_overlapping.py
usr/bin/maf_extract_chrom_ranges.py
usr/bin/maf_extract_ranges.py
usr/bin/maf_extract_ranges_indexed.py
usr/bin/maf_filter.py
usr/bin/maf_filter_max_wc.py
usr/bin/maf_gap_frequency.py
usr/bin/maf_gc_content.py
usr/bin/maf_interval_alignibility.py
usr/bin/maf_limit_to_species.py
usr/bin/maf_mapping_word_frequency.py
usr/bin/maf_mask_cpg.py
usr/bin/maf_mean_length_ungapped_piece.py
usr/bin/maf_percent_columns_matching.py
usr/bin/maf_percent_identity.py
usr/bin/maf_print_chroms.py
usr/bin/maf_print_scores.py
usr/bin/maf_randomize.py
usr/bin/maf_region_coverage_by_src.py
usr/bin/maf_select.py
usr/bin/maf_shuffle_columns.py
usr/bin/maf_species_in_all_files.py
usr/bin/maf_split_by_src.py
usr/bin/maf_thread_for_species.py
usr/bin/maf_tile.py
usr/bin/maf_tile_2.py
usr/bin/maf_tile_2bit.py
usr/bin/maf_to_axt.py
usr/bin/maf_to_concat_fasta.py
usr/bin/maf_to_fasta.py
usr/bin/maf_to_int_seqs.py
usr/bin/maf_translate_chars.py
usr/bin/maf_truncate.py
usr/bin/maf_word_frequency.py
usr/bin/mask_quality.py
usr/bin/nib_chrom_intervals_to_fasta.py
usr/bin/nib_intervals_to_fasta.py
usr/bin/nib_length.py
usr/bin/one_field_per_line.py
usr/bin/out_to_chain.py
usr/bin/prefix_lines.py
usr/bin/pretty_table.py
usr/bin/qv_to_bqv.py
usr/bin/random_lines.py
usr/bin/table_add_column.py
usr/bin/table_filter.py
usr/bin/tfloc_summary.py
usr/bin/ucsc_gene_table_to_intervals.py
usr/bin/wiggle_to_array_tree.py
usr/bin/wiggle_to_binned_array.py
usr/bin/wiggle_to_chr_binned_array.py
usr/bin/wiggle_to_simple.py
usr/lib/
usr/lib/python3.13/
usr/lib/python3.13/site-packages/
usr/lib/python3.13/site-packages/bx/
usr/lib/python3.13/site-packages/bx/__init__.py
usr/lib/python3.13/site-packages/bx/__pycache__/
usr/lib/python3.13/site-packages/bx/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/binned_array.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/binned_array.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/binned_array_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/binned_array_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_builders.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_builders.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_utils.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/bitset_utils.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/filter.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/filter.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/gene_reader.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/gene_reader.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/interval_index_file.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/interval_index_file.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/interval_index_file_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/interval_index_file_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/seqmapping.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/seqmapping.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/seqmapping_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/seqmapping_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/wiggle.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/wiggle.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/wiggle_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/__pycache__/wiggle_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/_seqmapping.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/align/
usr/lib/python3.13/site-packages/bx/align/__init__.py
usr/lib/python3.13/site-packages/bx/align/__pycache__/
usr/lib/python3.13/site-packages/bx/align/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/axt.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/axt.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/core.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/core.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/epo.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/epo.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/epo_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/epo_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/lav.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/lav.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/lav_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/lav_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/maf.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/maf.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/maf_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/maf_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/score.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/score.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/score_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/__pycache__/score_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/_core.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/align/_epo.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/align/axt.py
usr/lib/python3.13/site-packages/bx/align/core.py
usr/lib/python3.13/site-packages/bx/align/epo.py
usr/lib/python3.13/site-packages/bx/align/epo_tests.py
usr/lib/python3.13/site-packages/bx/align/lav.py
usr/lib/python3.13/site-packages/bx/align/lav_tests.py
usr/lib/python3.13/site-packages/bx/align/maf.py
usr/lib/python3.13/site-packages/bx/align/maf_tests.py
usr/lib/python3.13/site-packages/bx/align/score.py
usr/lib/python3.13/site-packages/bx/align/score_tests.py
usr/lib/python3.13/site-packages/bx/align/sitemask/
usr/lib/python3.13/site-packages/bx/align/sitemask/__init__.py
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/core.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/core.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/cpg.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/cpg.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/quality.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/quality.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/sitemask_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/__pycache__/sitemask_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/sitemask/_cpg.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/align/sitemask/core.py
usr/lib/python3.13/site-packages/bx/align/sitemask/cpg.py
usr/lib/python3.13/site-packages/bx/align/sitemask/quality.py
usr/lib/python3.13/site-packages/bx/align/sitemask/sitemask_tests.py
usr/lib/python3.13/site-packages/bx/align/tools/
usr/lib/python3.13/site-packages/bx/align/tools/__init__.py
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/chop.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/chop.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/fuse.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/fuse.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/thread.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/thread.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/tile.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/align/tools/__pycache__/tile.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/align/tools/chop.py
usr/lib/python3.13/site-packages/bx/align/tools/fuse.py
usr/lib/python3.13/site-packages/bx/align/tools/thread.py
usr/lib/python3.13/site-packages/bx/align/tools/tile.py
usr/lib/python3.13/site-packages/bx/arrays/
usr/lib/python3.13/site-packages/bx/arrays/__init__.py
usr/lib/python3.13/site-packages/bx/arrays/__pycache__/
usr/lib/python3.13/site-packages/bx/arrays/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/arrays/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/arrays/__pycache__/array_tree_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/arrays/__pycache__/array_tree_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/arrays/array_tree.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/arrays/array_tree_tests.py
usr/lib/python3.13/site-packages/bx/arrays/bed.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/arrays/wiggle.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bbi/
usr/lib/python3.13/site-packages/bx/bbi/__init__.py
usr/lib/python3.13/site-packages/bx/bbi/__pycache__/
usr/lib/python3.13/site-packages/bx/bbi/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/bbi/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/bbi/__pycache__/bigwig_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/bbi/__pycache__/bigwig_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/bbi/bbi_file.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bbi/bigbed_file.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bbi/bigwig_file.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bbi/bigwig_tests.py
usr/lib/python3.13/site-packages/bx/bbi/bpt_file.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bbi/cirtree_file.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/binned_array.py
usr/lib/python3.13/site-packages/bx/binned_array_tests.py
usr/lib/python3.13/site-packages/bx/bitset.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/bitset_builders.py
usr/lib/python3.13/site-packages/bx/bitset_tests.py
usr/lib/python3.13/site-packages/bx/bitset_utils.py
usr/lib/python3.13/site-packages/bx/cookbook/
usr/lib/python3.13/site-packages/bx/cookbook/__init__.py
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/attribute.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/attribute.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/doc_optparse.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/cookbook/__pycache__/doc_optparse.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/cookbook/attribute.py
usr/lib/python3.13/site-packages/bx/cookbook/doc_optparse.py
usr/lib/python3.13/site-packages/bx/filter.py
usr/lib/python3.13/site-packages/bx/gene_reader.py
usr/lib/python3.13/site-packages/bx/interval_index_file.py
usr/lib/python3.13/site-packages/bx/interval_index_file_tests.py
usr/lib/python3.13/site-packages/bx/intervals/
usr/lib/python3.13/site-packages/bx/intervals/__init__.py
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/cluster_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/cluster_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/intersection_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/intersection_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/io.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/io.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/random_intervals.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/__pycache__/random_intervals.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/cluster.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/intervals/cluster_tests.py
usr/lib/python3.13/site-packages/bx/intervals/intersection.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/intervals/intersection_tests.py
usr/lib/python3.13/site-packages/bx/intervals/io.py
usr/lib/python3.13/site-packages/bx/intervals/operations/
usr/lib/python3.13/site-packages/bx/intervals/operations/__init__.py
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/base_coverage.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/base_coverage.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/complement.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/complement.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/concat.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/concat.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/coverage.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/coverage.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/find_clusters.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/find_clusters.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/intersect.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/intersect.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/join.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/join.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/merge.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/merge.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/quicksect.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/quicksect.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/subtract.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/__pycache__/subtract.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intervals/operations/base_coverage.py
usr/lib/python3.13/site-packages/bx/intervals/operations/complement.py
usr/lib/python3.13/site-packages/bx/intervals/operations/concat.py
usr/lib/python3.13/site-packages/bx/intervals/operations/coverage.py
usr/lib/python3.13/site-packages/bx/intervals/operations/find_clusters.py
usr/lib/python3.13/site-packages/bx/intervals/operations/intersect.py
usr/lib/python3.13/site-packages/bx/intervals/operations/join.py
usr/lib/python3.13/site-packages/bx/intervals/operations/merge.py
usr/lib/python3.13/site-packages/bx/intervals/operations/quicksect.py
usr/lib/python3.13/site-packages/bx/intervals/operations/subtract.py
usr/lib/python3.13/site-packages/bx/intervals/random_intervals.py
usr/lib/python3.13/site-packages/bx/intseq/
usr/lib/python3.13/site-packages/bx/intseq/__init__.py
usr/lib/python3.13/site-packages/bx/intseq/__pycache__/
usr/lib/python3.13/site-packages/bx/intseq/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/intseq/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/intseq/ngramcount.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/misc/
usr/lib/python3.13/site-packages/bx/misc/__init__.py
usr/lib/python3.13/site-packages/bx/misc/__pycache__/
usr/lib/python3.13/site-packages/bx/misc/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/bgzf_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/bgzf_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/binary_file.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/binary_file.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/cdb.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/cdb.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/cdb_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/cdb_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/filecache.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/filecache.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/filecache_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/filecache_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/readlengths.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/readlengths.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seekbzip2.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seekbzip2.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seekbzip2_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seekbzip2_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seeklzop.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seeklzop.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seeklzop_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/misc/__pycache__/seeklzop_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/misc/_seekbzip2.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/misc/bgzf.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/misc/bgzf_tests.py
usr/lib/python3.13/site-packages/bx/misc/binary_file.py
usr/lib/python3.13/site-packages/bx/misc/cdb.py
usr/lib/python3.13/site-packages/bx/misc/cdb_tests.py
usr/lib/python3.13/site-packages/bx/misc/filecache.py
usr/lib/python3.13/site-packages/bx/misc/filecache_tests.py
usr/lib/python3.13/site-packages/bx/misc/readlengths.py
usr/lib/python3.13/site-packages/bx/misc/seekbzip2.py
usr/lib/python3.13/site-packages/bx/misc/seekbzip2_tests.py
usr/lib/python3.13/site-packages/bx/misc/seeklzop.py
usr/lib/python3.13/site-packages/bx/misc/seeklzop_tests.py
usr/lib/python3.13/site-packages/bx/motif/
usr/lib/python3.13/site-packages/bx/motif/__init__.py
usr/lib/python3.13/site-packages/bx/motif/__pycache__/
usr/lib/python3.13/site-packages/bx/motif/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/__pycache__/pwm.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/__pycache__/pwm.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/__pycache__/pwm_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/__pycache__/pwm_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/_pwm.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/motif/io/
usr/lib/python3.13/site-packages/bx/motif/io/__init__.py
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/transfac.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/transfac.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/transfac_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/io/__pycache__/transfac_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/io/transfac.py
usr/lib/python3.13/site-packages/bx/motif/io/transfac_tests.py
usr/lib/python3.13/site-packages/bx/motif/logo/
usr/lib/python3.13/site-packages/bx/motif/logo/__init__.py
usr/lib/python3.13/site-packages/bx/motif/logo/__pycache__/
usr/lib/python3.13/site-packages/bx/motif/logo/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/motif/logo/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/motif/logo/template.ps
usr/lib/python3.13/site-packages/bx/motif/pwm.py
usr/lib/python3.13/site-packages/bx/motif/pwm_tests.py
usr/lib/python3.13/site-packages/bx/phylo/
usr/lib/python3.13/site-packages/bx/phylo/__init__.py
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/newick.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/newick.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/newick_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/newick_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/phast.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/phast.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/phast_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/phylo/__pycache__/phast_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/phylo/newick.py
usr/lib/python3.13/site-packages/bx/phylo/newick_tests.py
usr/lib/python3.13/site-packages/bx/phylo/phast.py
usr/lib/python3.13/site-packages/bx/phylo/phast_tests.py
usr/lib/python3.13/site-packages/bx/pwm/
usr/lib/python3.13/site-packages/bx/pwm/__init__.py
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/bed_score_aligned_pwm.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/bed_score_aligned_pwm.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/bed_score_aligned_string.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/bed_score_aligned_string.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/maf_select_motifs.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/maf_select_motifs.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/position_weight_matrix.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/position_weight_matrix.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_maf.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_maf.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_motifs.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_motifs.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_positions.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_score_positions.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/pwm/__pycache__/pwm_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/pwm/_position_weight_matrix.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/pwm/bed_score_aligned_pwm.py
usr/lib/python3.13/site-packages/bx/pwm/bed_score_aligned_string.py
usr/lib/python3.13/site-packages/bx/pwm/maf_select_motifs.py
usr/lib/python3.13/site-packages/bx/pwm/position_weight_matrix.py
usr/lib/python3.13/site-packages/bx/pwm/pwm_score_maf.py
usr/lib/python3.13/site-packages/bx/pwm/pwm_score_motifs.py
usr/lib/python3.13/site-packages/bx/pwm/pwm_score_positions.py
usr/lib/python3.13/site-packages/bx/pwm/pwm_tests.py
usr/lib/python3.13/site-packages/bx/seq/
usr/lib/python3.13/site-packages/bx/seq/__init__.py
usr/lib/python3.13/site-packages/bx/seq/__pycache__/
usr/lib/python3.13/site-packages/bx/seq/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/core.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/core.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/fasta.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/fasta.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/fasta_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/fasta_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/nib.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/nib.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/nib_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/nib_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/qdna.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/qdna.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/qdna_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/qdna_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/seq.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/seq.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/seq_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/seq_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/twobit.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/twobit.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/twobit_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/seq/__pycache__/twobit_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/seq/_nib.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/seq/_twobit.cpython-313-x86_64-linux-gnu.so
usr/lib/python3.13/site-packages/bx/seq/core.py
usr/lib/python3.13/site-packages/bx/seq/fasta.py
usr/lib/python3.13/site-packages/bx/seq/fasta_tests.py
usr/lib/python3.13/site-packages/bx/seq/nib.py
usr/lib/python3.13/site-packages/bx/seq/nib_tests.py
usr/lib/python3.13/site-packages/bx/seq/qdna.py
usr/lib/python3.13/site-packages/bx/seq/qdna_tests.py
usr/lib/python3.13/site-packages/bx/seq/seq.py
usr/lib/python3.13/site-packages/bx/seq/seq_tests.py
usr/lib/python3.13/site-packages/bx/seq/twobit.py
usr/lib/python3.13/site-packages/bx/seq/twobit_tests.py
usr/lib/python3.13/site-packages/bx/seqmapping.py
usr/lib/python3.13/site-packages/bx/seqmapping_tests.py
usr/lib/python3.13/site-packages/bx/tabular/
usr/lib/python3.13/site-packages/bx/tabular/__init__.py
usr/lib/python3.13/site-packages/bx/tabular/__pycache__/
usr/lib/python3.13/site-packages/bx/tabular/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/tabular/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/tabular/__pycache__/io.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx/tabular/__pycache__/io.cpython-313.pyc
usr/lib/python3.13/site-packages/bx/tabular/io.py
usr/lib/python3.13/site-packages/bx/wiggle.py
usr/lib/python3.13/site-packages/bx/wiggle_tests.py
usr/lib/python3.13/site-packages/bx_extras/
usr/lib/python3.13/site-packages/bx_extras/__init__.py
usr/lib/python3.13/site-packages/bx_extras/__pycache__/
usr/lib/python3.13/site-packages/bx_extras/__pycache__/__init__.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/__init__.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/fpconst.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/fpconst.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/fpconst_tests.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/fpconst_tests.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/lrucache.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/lrucache.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/pstat.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/pstat.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/stats.cpython-313.opt-1.pyc
usr/lib/python3.13/site-packages/bx_extras/__pycache__/stats.cpython-313.pyc
usr/lib/python3.13/site-packages/bx_extras/fpconst.py
usr/lib/python3.13/site-packages/bx_extras/fpconst_tests.py
usr/lib/python3.13/site-packages/bx_extras/lrucache.py
usr/lib/python3.13/site-packages/bx_extras/pstat.py
usr/lib/python3.13/site-packages/bx_extras/stats.py
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/PKG-INFO
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/SOURCES.txt
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/dependency_links.txt
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/requires.txt
usr/lib/python3.13/site-packages/bx_python-0.14.0-py3.13.egg-info/top_level.txt
usr/share/
usr/share/licenses/
usr/share/licenses/python-bx/
usr/share/licenses/python-bx/LICENSE
