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usr/
usr/share/
usr/share/phylonet-hmm/
usr/share/phylonet-hmm/phylonet-hmm.jar
usr/share/phylonet-hmm/templates/
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/autoinput.txt
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/basic-info.txt
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/gene.trees
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/length-parameter-constraint-sets
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/length-parameter-inequality-constraints
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/length-parameters
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/parental.trees
usr/share/phylonet-hmm/templates/liu-et-al-2014-empirical/switching-frequency-ratio-terms
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/autoinput.txt
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/basic-info.txt
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/gene.trees
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/length-parameter-constraint-sets
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/length-parameter-inequality-constraints
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/length-parameters
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/parental.trees
usr/share/phylonet-hmm/templates/liu-et-al-2014-simulated/switching-frequency-ratio-terms
